Agent Folder Init

Create a comprehensive .agents/ folder structure for AI-first development workflows.

Purpose

This skill scaffolds a complete AI agent documentation system including:

• Session tracking (daily files)
• Task management
• Coding standards and rules
• Architecture decision records
• Security checklists
• SOPs for common workflows
• Agent config folders (.claude, .codex, .cursor) with commands, rules, and agents

When to Use

Use this skill when:

• Starting a new project that will use AI coding assistants
• Setting up AI-first development workflows
• Migrating an existing project to use structured AI documentation

Usage

Run the scaffold script:

python3 ~/.claude/skills/agent-folder-init/scripts/scaffold.py --help

# Basic usage
python3 ~/.claude/skills/agent-folder-init/scripts/scaffold.py \
  --root /path/to/project \
  --name "My Project"

# With custom options
python3 ~/.claude/skills/agent-folder-init/scripts/scaffold.py \
  --root /path/to/project \
  --name "My Project" \
  --tech "nextjs,nestjs" \
  --allow-outside

Generated Structure

Documentation (.agents/)

.agents/
├── README.md                    # Navigation hub
├── SYSTEM/
│   ├── README.md
│   ├── RULES.md                 # Coding standards
│   ├── ARCHITECTURE.md          # What's implemented
│   ├── SUMMARY.md               # Current state
│   ├── PRD.md                   # Product Requirements Document
│   ├── ENTITIES.md              # Entity documentation
│   ├── ai/
│   │   ├── SESSION-QUICK-START.md
│   │   ├── SESSION-DOCUMENTATION-PROTOCOL.md
│   │   └── USER-PREFERENCES.md
│   ├── architecture/
│   │   ├── DECISIONS.md         # ADRs
│   │   └── PROJECT-MAP.md
│   ├── critical/
│   │   ├── CRITICAL-NEVER-DO.md
│   │   └── CROSS-PROJECT-RULES.md
│   └── quality/
│       └── SECURITY-CHECKLIST.md
├── TASKS/
│   ├── README.md
│   └── INBOX.md
├── SESSIONS/
│   ├── README.md
│   └── TEMPLATE.md
├── SOP/
│   └── README.md
├── EXAMPLES/
│   └── README.md
└── FEEDBACK/
    └── README.md

Agent Configs

.claude/
├── commands/                    # Slash commands (project-specific)
│   ├── start.md
│   ├── end.md
│   ├── new-session.md
│   ├── commit-summary.md
│   ├── code-review.md
│   ├── bug.md
│   ├── quick-fix.md
│   ├── refactor-code.md
│   ├── inbox.md
│   ├── task.md
│   ├── validate.md
│   └── clean.md
├── agents/                      # Specialized agents (project-specific)
│   ├── senior-backend-engineer.md
│   └── senior-frontend-engineer.md
└── skills/                      # Project-specific skills

.codex/
├── commands/
└── skills/

.cursor/
└── commands/

Note: Agent configs (agents/, commands/) are copied from the library root (e.g., ~/.claude/agents/) to ensure projects get the latest version. Rules are NOT copied because they’re inherited from ~/.claude/rules/ at the library/personal level – this prevents duplication and ensures all projects use consistent rules.

Root Files

• AGENTS.md – Points to .agents/README.md
• CLAUDE.md – Claude-specific entry point
• CODEX.md – Codex-specific entry point
• .editorconfig – Editor configuration

Key Patterns

Naming Conventions

• Top-level directories: ALL-CAPS (SYSTEM/, TASKS/, SESSIONS/)
• Files: ALL-CAPS for critical files (README.md, RULES.md), kebab-case for others

Session Files

• One file per day: YYYY-MM-DD.md
• Multiple sessions same day use Session 1, Session 2, etc. in the same file

Customization

After scaffolding, customize:

1. SYSTEM/PRD.md – Fill in your product requirements (use with fullstack-workspace-init)
2. SYSTEM/ENTITIES.md – Document your data entities
3. SYSTEM/RULES.md – Add project-specific coding standards
4. SYSTEM/ARCHITECTURE.md – Document your architecture
5. SYSTEM/critical/CRITICAL-NEVER-DO.md – Add project-specific violations
6. SOP/ – Add your standard operating procedures
7. .claude/rules/ – Add project-specific rules
8. .claude/commands/ – Add project-specific commands

Integration with Other Skills

This skill integrates with: